2021-09-04 07:05:45,598 INFO BenchmarkPipeline --- START PROCESSING 'SRR6024957-SRR6024958-SRR6024959-SRR6024960' --- 2021-09-04 07:05:45,599 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR6024957.sra 2021-09-04 07:05:45,599 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__ 2021-09-04 07:05:45,599 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpa4k_dt2m "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR6024957.sra" 2021-09-04 07:23:49,100 INFO SimpleSubprocess Sra2FastQ - 0:18:03 2021-09-04 07:23:49,127 DEBUG SimpleSubprocess gzip /tmp/tmpa4k_dt2m/* 2021-09-04 08:39:55,654 INFO SimpleSubprocess GZipFastQ - 1:16:06 2021-09-04 08:39:55,673 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq"; mv /tmp/tmpa4k_dt2m/SRR6024957_2.fastq.gz /tmp/tmpa4k_dt2m/SRR6024957_R2.fastq.gz; mv /tmp/tmpa4k_dt2m/SRR6024957_1.fastq.gz /tmp/tmpa4k_dt2m/SRR6024957_R1.fastq.gz; cp /tmp/tmpa4k_dt2m/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq" 2021-09-04 08:40:58,273 INFO SimpleSubprocess CopyFiles - 0:01:02 2021-09-04 08:41:00,057 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR6024958.sra 2021-09-04 08:41:00,057 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__ 2021-09-04 08:41:00,083 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmp0tx3kr2x "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR6024958.sra" 2021-09-04 09:01:26,469 INFO SimpleSubprocess Sra2FastQ - 0:20:26 2021-09-04 09:01:26,484 DEBUG SimpleSubprocess gzip /tmp/tmp0tx3kr2x/* 2021-09-04 10:33:31,806 INFO SimpleSubprocess GZipFastQ - 1:32:05 2021-09-04 10:33:31,822 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq"; mv /tmp/tmp0tx3kr2x/SRR6024958_2.fastq.gz /tmp/tmp0tx3kr2x/SRR6024958_R2.fastq.gz; mv /tmp/tmp0tx3kr2x/SRR6024958_1.fastq.gz /tmp/tmp0tx3kr2x/SRR6024958_R1.fastq.gz; cp /tmp/tmp0tx3kr2x/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq" 2021-09-04 10:35:15,671 INFO SimpleSubprocess CopyFiles - 0:01:43 2021-09-04 10:35:17,521 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR6024959.sra 2021-09-04 10:35:17,521 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__ 2021-09-04 10:35:17,522 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpb2sviwmx "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR6024959.sra" 2021-09-04 10:52:29,481 INFO SimpleSubprocess Sra2FastQ - 0:17:11 2021-09-04 10:52:29,500 DEBUG SimpleSubprocess gzip /tmp/tmpb2sviwmx/* 2021-09-04 11:28:50,863 INFO SimpleSubprocess GZipFastQ - 0:36:21 2021-09-04 11:28:50,863 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq"; mv /tmp/tmpb2sviwmx/SRR6024959_2.fastq.gz /tmp/tmpb2sviwmx/SRR6024959_R2.fastq.gz; mv /tmp/tmpb2sviwmx/SRR6024959_1.fastq.gz /tmp/tmpb2sviwmx/SRR6024959_R1.fastq.gz; cp /tmp/tmpb2sviwmx/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq" 2021-09-04 11:28:57,789 INFO SimpleSubprocess CopyFiles - 0:00:06 2021-09-04 11:28:58,834 INFO Sra2FastQ Accession: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR6024960.sra 2021-09-04 11:28:58,834 INFO Sra2FastQ Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__ 2021-09-04 11:28:58,835 DEBUG SimpleSubprocess fastq-dump --split-3 -O /tmp/tmpobhbdygw "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Source/SRR6024960.sra" 2021-09-04 11:46:40,433 INFO SimpleSubprocess Sra2FastQ - 0:17:41 2021-09-04 11:46:40,453 DEBUG SimpleSubprocess gzip /tmp/tmpobhbdygw/* 2021-09-04 12:27:06,766 INFO SimpleSubprocess GZipFastQ - 0:40:26 2021-09-04 12:27:06,767 DEBUG SimpleSubprocess mkdir -p "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq"; mv /tmp/tmpobhbdygw/SRR6024960_2.fastq.gz /tmp/tmpobhbdygw/SRR6024960_R2.fastq.gz; mv /tmp/tmpobhbdygw/SRR6024960_1.fastq.gz /tmp/tmpobhbdygw/SRR6024960_R1.fastq.gz; cp /tmp/tmpobhbdygw/*_R*.fastq* "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq" 2021-09-04 12:27:14,679 INFO SimpleSubprocess CopyFiles - 0:00:07 2021-09-04 12:27:15,884 INFO Juicer Directory: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__ 2021-09-04 12:27:15,884 INFO Juicer Genome assembly: mm10 2021-09-04 12:27:15,884 INFO Juicer Genome FASTA path: /Data/DataBases/mm10/mm10_canonic.fa 2021-09-04 12:27:15,884 INFO Juicer Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-04 12:27:15,884 INFO Juicer Enzyme: DpnII 2021-09-04 12:27:15,884 INFO Juicer Restriction sites path: /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt 2021-09-04 12:27:15,884 INFO Juicer Threads: 10 2021-09-04 12:27:15,884 DEBUG SimpleSubprocess rm -rf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits" 2021-09-04 12:27:15,936 INFO SimpleSubprocess RemoveTrash - 0:00:00 2021-09-04 12:27:15,936 DEBUG SimpleSubprocess bash "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh" -t 10 -D "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer" -g mm10 -z "/Data/DataBases/mm10/mm10_canonic.fa" -p "/Data/DataBases/mm10/mm10_canonic.chrom.sizes" -s DpnII -y "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt" -d "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__" 2021-09-05 07:59:17,932 INFO SimpleSubprocess Juicer - 19:32:01 2021-09-05 07:59:18,072 INFO Juicer Using /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt as site file (-: Looking for fastq files...fastq files exist (-: Aligning files matching /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/fastq/*_R*.fastq* to genome mm10 with site file /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt (-: Created /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits and /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned. bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024957_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024957_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024957.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024957.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024958_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024958_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024958.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024958.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024959_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024959_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024959.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024959.fastq.gz.sam done successfully bwa mem -SP5M -t 10 /Data/DataBases/mm10/mm10_canonic.fa /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024960_R1.fastq.gz /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024960_R2.fastq.gz > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024960.fastq.gz.sam (-: Align of /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/splits/SRR6024960.fastq.gz.sam done successfully (-: Finished sorting all sorted files into a single merge. WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-05T06:25:45,704] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) Not including fragment map Start preprocess Writing header Writing body ........................................................................................................................................................................................................................................ Writing footer Finished preprocess Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000 Calculating norms for zoom BP_50000 Calculating norms for zoom BP_25000 Calculating norms for zoom BP_10000 Calculating norms for zoom BP_5000 Calculating norms for zoom BP_1000 Finished writing norms WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-05T07:14:38,975] [Globals.java:138] [main] Development mode is enabled Using 1 CPU thread(s) Not including fragment map Start preprocess Writing header Writing body ........................................................................................................................................................................................................................................ Writing footer Finished preprocess Calculating norms for zoom BP_2500000 Calculating norms for zoom BP_1000000 Calculating norms for zoom BP_500000 Calculating norms for zoom BP_250000 Calculating norms for zoom BP_100000 Calculating norms for zoom BP_50000 Calculating norms for zoom BP_25000 Calculating norms for zoom BP_10000 Calculating norms for zoom BP_5000 Calculating norms for zoom BP_1000 Finished writing norms /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools is post-processing Hi-C for mm10 Data read from /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_30.hic. Motifs read from /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/references/motif ARROWHEAD: WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance. WARN [2021-09-05T07:59:16,909] [Globals.java:138] [main] Development mode is enabled Reading file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_30.hic Using 1 CPU thread(s) HiCCUPS: GPUs are not installed so HiCCUPs cannot be run (-: Postprocessing successfully completed, maps too sparse to annotate or GPUs unavailable (-: (-: Pipeline successfully completed (-: Run cleanup.sh to remove the splits directory Check /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned for results 2021-09-05 07:59:18,328 INFO MakeInterPairs Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/merged_nodups.txt 2021-09-05 07:59:18,328 INFO MakeInterPairs Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt 2021-09-05 07:59:18,417 DEBUG SimpleSubprocess awk -F " " '{print $2 "\t" $3 "\t" $6 "\t" $7}' "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/merged_nodups.txt" > "/tmp/tmplib1uvgq/inter.pairs.txt" 2021-09-05 08:01:19,850 INFO SimpleSubprocess MakeInterPairs - 0:02:01 2021-09-05 08:01:19,850 DEBUG SimpleSubprocess cp "/tmp/tmplib1uvgq/inter.pairs.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt" 2021-09-05 08:01:22,731 INFO SimpleSubprocess CopyFiles - 0:00:02 2021-09-05 08:01:23,264 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt 2021-09-05 08:01:23,264 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_5kb.cool 2021-09-05 08:01:23,264 INFO Pairs2Cool Genome assembly: mm10 2021-09-05 08:01:23,264 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-05 08:01:23,264 INFO Pairs2Cool Resolution [bp]: 5000 2021-09-05 08:01:23,303 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":5000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt" "/tmp/tmptpgvh942/inter_no_balanced.cool" 2021-09-05 08:04:19,078 INFO SimpleSubprocess MakeCool - 0:02:55 2021-09-05 08:04:19,078 DEBUG SimpleSubprocess cp "/tmp/tmptpgvh942/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_5kb.cool" 2021-09-05 08:04:19,139 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:04:19,152 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt 2021-09-05 08:04:19,153 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_10kb.cool 2021-09-05 08:04:19,153 INFO Pairs2Cool Genome assembly: mm10 2021-09-05 08:04:19,153 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-05 08:04:19,153 INFO Pairs2Cool Resolution [bp]: 10000 2021-09-05 08:04:19,182 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":10000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt" "/tmp/tmpxepucdc_/inter_no_balanced.cool" 2021-09-05 08:07:01,167 INFO SimpleSubprocess MakeCool - 0:02:41 2021-09-05 08:07:01,167 DEBUG SimpleSubprocess cp "/tmp/tmpxepucdc_/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_10kb.cool" 2021-09-05 08:07:01,220 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:07:01,249 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt 2021-09-05 08:07:01,249 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_20kb.cool 2021-09-05 08:07:01,249 INFO Pairs2Cool Genome assembly: mm10 2021-09-05 08:07:01,249 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-05 08:07:01,249 INFO Pairs2Cool Resolution [bp]: 20000 2021-09-05 08:07:01,263 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":20000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt" "/tmp/tmpuf9jlfrs/inter_no_balanced.cool" 2021-09-05 08:09:38,029 INFO SimpleSubprocess MakeCool - 0:02:36 2021-09-05 08:09:38,029 DEBUG SimpleSubprocess cp "/tmp/tmpuf9jlfrs/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_20kb.cool" 2021-09-05 08:09:38,081 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:09:38,087 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt 2021-09-05 08:09:38,087 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_25kb.cool 2021-09-05 08:09:38,087 INFO Pairs2Cool Genome assembly: mm10 2021-09-05 08:09:38,087 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-05 08:09:38,087 INFO Pairs2Cool Resolution [bp]: 25000 2021-09-05 08:09:38,088 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":25000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt" "/tmp/tmp94kjtkxp/inter_no_balanced.cool" 2021-09-05 08:12:11,738 INFO SimpleSubprocess MakeCool - 0:02:33 2021-09-05 08:12:11,738 DEBUG SimpleSubprocess cp "/tmp/tmp94kjtkxp/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_25kb.cool" 2021-09-05 08:12:11,781 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:12:11,853 INFO Pairs2Cool Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt 2021-09-05 08:12:11,853 INFO Pairs2Cool Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_50kb.cool 2021-09-05 08:12:11,853 INFO Pairs2Cool Genome assembly: mm10 2021-09-05 08:12:11,853 INFO Pairs2Cool Chrom sizes file path: /Data/DataBases/mm10/mm10_canonic.chrom.sizes 2021-09-05 08:12:11,853 INFO Pairs2Cool Resolution [bp]: 50000 2021-09-05 08:12:11,853 DEBUG SimpleSubprocess cooler cload pairs -c1 1 -p1 2 -c2 3 -p2 4 --assembly mm10 "/Data/DataBases/mm10/mm10_canonic.chrom.sizes":50000 "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt" "/tmp/tmp3h6n48nt/inter_no_balanced.cool" 2021-09-05 08:14:38,371 INFO SimpleSubprocess MakeCool - 0:02:26 2021-09-05 08:14:38,371 DEBUG SimpleSubprocess cp "/tmp/tmp3h6n48nt/inter_no_balanced.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_50kb.cool" 2021-09-05 08:14:38,407 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:14:38,496 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_5kb.cool 2021-09-05 08:14:38,496 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_5kb.cool 2021-09-05 08:14:38,496 INFO CTaleNormalize Capture: chr13:53,895,001-57,200,000 2021-09-05 08:14:38,545 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_5kb.cool" "/tmp/tmp3aj2wbsp/inter.cool" 2021-09-05 08:14:38,605 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-05 08:14:38,605 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmp3aj2wbsp/inter.cool" "chr13:53,895,001-57,200,000" 2021-09-05 08:14:43,508 INFO SimpleSubprocess NormalizeCool - 0:00:04 2021-09-05 08:14:43,508 DEBUG SimpleSubprocess cp "/tmp/tmp3aj2wbsp/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_5kb.cool" 2021-09-05 08:14:43,584 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:14:43,634 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_10kb.cool 2021-09-05 08:14:43,634 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_10kb.cool 2021-09-05 08:14:43,634 INFO CTaleNormalize Capture: chr13:53,895,001-57,200,000 2021-09-05 08:14:43,635 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_10kb.cool" "/tmp/tmphjj9wnao/inter.cool" 2021-09-05 08:14:43,687 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-05 08:14:43,687 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmphjj9wnao/inter.cool" "chr13:53,895,001-57,200,000" 2021-09-05 08:14:46,333 INFO SimpleSubprocess NormalizeCool - 0:00:02 2021-09-05 08:14:46,333 DEBUG SimpleSubprocess cp "/tmp/tmphjj9wnao/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_10kb.cool" 2021-09-05 08:14:46,385 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:14:46,412 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_20kb.cool 2021-09-05 08:14:46,412 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_20kb.cool 2021-09-05 08:14:46,412 INFO CTaleNormalize Capture: chr13:53,895,001-57,200,000 2021-09-05 08:14:46,435 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_20kb.cool" "/tmp/tmp373jgnnx/inter.cool" 2021-09-05 08:14:46,481 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-05 08:14:46,481 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmp373jgnnx/inter.cool" "chr13:53,895,001-57,200,000" 2021-09-05 08:14:48,381 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-05 08:14:48,381 DEBUG SimpleSubprocess cp "/tmp/tmp373jgnnx/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_20kb.cool" 2021-09-05 08:14:48,427 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:14:48,434 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_25kb.cool 2021-09-05 08:14:48,434 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_25kb.cool 2021-09-05 08:14:48,434 INFO CTaleNormalize Capture: chr13:53,895,001-57,200,000 2021-09-05 08:14:48,458 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_25kb.cool" "/tmp/tmp88yvlebj/inter.cool" 2021-09-05 08:14:48,501 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-05 08:14:48,501 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmp88yvlebj/inter.cool" "chr13:53,895,001-57,200,000" 2021-09-05 08:14:50,073 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-05 08:14:50,073 DEBUG SimpleSubprocess cp "/tmp/tmp88yvlebj/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_25kb.cool" 2021-09-05 08:14:50,120 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:14:50,126 INFO CTaleNormalize Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_50kb.cool 2021-09-05 08:14:50,126 INFO CTaleNormalize Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_50kb.cool 2021-09-05 08:14:50,126 INFO CTaleNormalize Capture: chr13:53,895,001-57,200,000 2021-09-05 08:14:50,155 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_50kb.cool" "/tmp/tmp6x92xbr4/inter.cool" 2021-09-05 08:14:50,193 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-05 08:14:50,193 DEBUG SimpleSubprocess ctale_normalize "/tmp/tmp6x92xbr4/inter.cool" "chr13:53,895,001-57,200,000" 2021-09-05 08:14:51,443 INFO SimpleSubprocess NormalizeCool - 0:00:01 2021-09-05 08:14:51,443 DEBUG SimpleSubprocess cp "/tmp/tmp6x92xbr4/inter.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_50kb.cool" 2021-09-05 08:14:51,478 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:14:51,527 DEBUG SimpleSubprocess echo > /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/vector.txt 2021-09-05 08:14:51,533 INFO SimpleSubprocess MakeVector - 0:00:00 2021-09-05 08:14:51,533 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_5kb.cool 2021-09-05 08:14:51,534 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/vector.txt 2021-09-05 08:14:51,534 INFO AddWeight Chromosome: chr13 2021-09-05 08:14:51,534 INFO AddWeight Resolution [bp]: 5000 2021-09-05 08:14:53,292 INFO AddWeight AddWeight successfully finished 2021-09-05 08:14:53,292 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_10kb.cool 2021-09-05 08:14:53,293 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/vector.txt 2021-09-05 08:14:53,293 INFO AddWeight Chromosome: chr13 2021-09-05 08:14:53,293 INFO AddWeight Resolution [bp]: 10000 2021-09-05 08:14:53,347 INFO AddWeight AddWeight successfully finished 2021-09-05 08:14:53,348 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_20kb.cool 2021-09-05 08:14:53,348 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/vector.txt 2021-09-05 08:14:53,348 INFO AddWeight Chromosome: chr13 2021-09-05 08:14:53,348 INFO AddWeight Resolution [bp]: 20000 2021-09-05 08:14:53,378 INFO AddWeight AddWeight successfully finished 2021-09-05 08:14:53,378 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_25kb.cool 2021-09-05 08:14:53,378 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/vector.txt 2021-09-05 08:14:53,378 INFO AddWeight Chromosome: chr13 2021-09-05 08:14:53,378 INFO AddWeight Resolution [bp]: 25000 2021-09-05 08:14:53,404 INFO AddWeight AddWeight successfully finished 2021-09-05 08:14:53,404 INFO AddWeight Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_50kb.cool 2021-09-05 08:14:53,405 INFO AddWeight Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/vector.txt 2021-09-05 08:14:53,405 INFO AddWeight Chromosome: chr13 2021-09-05 08:14:53,405 INFO AddWeight Resolution [bp]: 50000 2021-09-05 08:14:53,425 INFO AddWeight AddWeight successfully finished 2021-09-05 08:14:53,428 INFO Vector2HiC Input file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.hic 2021-09-05 08:14:53,428 INFO Vector2HiC Output file: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_norm.hic 2021-09-05 08:14:53,428 INFO Vector2HiC Vector: /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/vector.txt 2021-09-05 08:14:53,428 INFO Vector2HiC Threads: 10 2021-09-05 08:14:53,545 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.hic" "/tmp/tmplkqp6hxj/inter.hic" 2021-09-05 08:14:53,911 INFO SimpleSubprocess TempFiles - 0:00:00 2021-09-05 08:14:53,911 INFO Vector2HiC Vector: vector c-tale_normalization chr13 5000 BP 2021-09-05 08:14:53,912 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmplkqp6hxj/inter.hic" "/tmp/tmplkqp6hxj/vector.txt" 2021-09-05 08:14:58,512 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-05 08:14:58,512 INFO Vector2HiC Vector: vector c-tale_normalization chr13 10000 BP 2021-09-05 08:14:58,513 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmplkqp6hxj/inter.hic" "/tmp/tmplkqp6hxj/vector.txt" 2021-09-05 08:15:02,560 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-05 08:15:02,560 INFO Vector2HiC Vector: vector c-tale_normalization chr13 20000 BP 2021-09-05 08:15:02,560 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmplkqp6hxj/inter.hic" "/tmp/tmplkqp6hxj/vector.txt" 2021-09-05 08:15:06,456 INFO SimpleSubprocess NormalizeHiC - 0:00:03 2021-09-05 08:15:06,456 INFO Vector2HiC Vector: vector c-tale_normalization chr13 25000 BP 2021-09-05 08:15:06,535 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmplkqp6hxj/inter.hic" "/tmp/tmplkqp6hxj/vector.txt" 2021-09-05 08:15:10,750 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-05 08:15:10,750 INFO Vector2HiC Vector: vector c-tale_normalization chr13 50000 BP 2021-09-05 08:15:10,809 DEBUG SimpleSubprocess java -jar "/Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/common/juicer_tools.jar" addNorm -j 10 "/tmp/tmplkqp6hxj/inter.hic" "/tmp/tmplkqp6hxj/vector.txt" 2021-09-05 08:15:14,923 INFO SimpleSubprocess NormalizeHiC - 0:00:04 2021-09-05 08:15:14,924 DEBUG SimpleSubprocess cp "/tmp/tmplkqp6hxj/inter.hic" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_norm.hic" 2021-09-05 08:15:15,369 INFO SimpleSubprocess CopyFiles - 0:00:00 2021-09-05 08:15:15,470 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/merged_nodups.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/merged_nodups.txt" 2021-09-05 08:18:07,342 INFO SimpleSubprocess CopyResult - 0:02:51 2021-09-05 08:18:07,428 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.pairs.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter.pairs.txt" 2021-09-05 08:18:35,263 INFO SimpleSubprocess CopyResult - 0:00:27 2021-09-05 08:18:35,263 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/vector.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/vector.txt" 2021-09-05 08:18:35,416 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:35,416 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_norm.hic" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter.hic" 2021-09-05 08:18:40,177 INFO SimpleSubprocess CopyResult - 0:00:04 2021-09-05 08:18:40,177 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter.txt" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_statistics.txt" 2021-09-05 08:18:40,405 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:40,405 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_5kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_no_balanced_5kb.cool" 2021-09-05 08:18:41,055 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:41,056 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_5kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_5kb.cool" 2021-09-05 08:18:42,029 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:42,029 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_10kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_no_balanced_10kb.cool" 2021-09-05 08:18:42,830 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:42,830 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_10kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_10kb.cool" 2021-09-05 08:18:43,379 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:43,380 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_20kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_no_balanced_20kb.cool" 2021-09-05 08:18:43,979 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:43,980 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_20kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_20kb.cool" 2021-09-05 08:18:45,030 INFO SimpleSubprocess CopyResult - 0:00:01 2021-09-05 08:18:45,031 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_25kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_no_balanced_25kb.cool" 2021-09-05 08:18:45,655 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:45,656 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_25kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_25kb.cool" 2021-09-05 08:18:46,056 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:46,056 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_no_balanced_50kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_no_balanced_50kb.cool" 2021-09-05 08:18:46,492 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:46,492 DEBUG SimpleSubprocess cp "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__/aligned/inter_50kb.cool" "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/inter_50kb.cool" 2021-09-05 08:18:46,879 INFO SimpleSubprocess CopyResult - 0:00:00 2021-09-05 08:18:46,926 DEBUG SimpleSubprocess rm -rf "/Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR6024957-SRR6024958-SRR6024959-SRR6024960/__temp__" 2021-09-05 08:19:23,612 INFO SimpleSubprocess RemoveTemp - 0:00:36 2021-09-05 08:19:23,612 INFO BenchmarkPipeline 'SRR6024957-SRR6024958-SRR6024959-SRR6024960' FINISHED, SUMMARY TIME - 1 day, 1:13:38